YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69244414, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.93
Non-Cytoplasmic	44	53	0.79
Transmembrane Helix	54	72	0.91
Cytoplasmic	73	102	0.84
Transmembrane Helix	103	124	0.92
Non-Cytoplasmic	125	130	0.77
Transmembrane Helix	131	149	0.90
Cytoplasmic	150	163	0.92
Transmembrane Helix	164	181	0.89
Non-Cytoplasmic	182	185	0.55
Transmembrane Helix	186	206	0.86
Cytoplasmic	207	282	0.92
Transmembrane Helix	283	304	0.87
Non-Cytoplasmic	305	309	0.54
Transmembrane Helix	310	329	0.88
Cytoplasmic	330	348	0.88
Transmembrane Helix	349	370	0.94
Non-Cytoplasmic	371	375	0.90
Transmembrane Helix	376	395	0.92
Cytoplasmic	396	403	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFFQKRLA RHQKKMMKYM RYVLNDHFVL VCLFLIGGVG LYYSNWLKTL QPPFAIGGLI  60
   61 ISVFWMLCLF VGKMATFAEA ADIVFLLPKE KEMQTYLERA FRYSCIFPLI FLILACGLAM 120
  121 PLVVVSTEQS FSMFFVYLII LWSLKFSHLQ IKRAELFRLD QQVIRYWKLG WFFSSLIFLF 180
  181 LSFYWLIWAG IAGALVQASL YYWFLWKQQE KGLDWEKMVH VEEHRLHQIY QFINLFTDVP 240
  241 EITAKIKRRR YLDPILTHIK RESKNTYLYL FARRLARGSD FSGLYFRLVI IGGLLIAGVV 300
  301 DFYFSLIIGF LFLYLIGFQL LPLANQFRYM VLVQLYPIHK NQKKQAIQYL LTWVLIIASV 360
  361 IFGLIAAVVL DGQQRWVPLA AYLIVTMLFV KLYVPTRLKK MSD