YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX10_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	151	0.98
Transmembrane Helix	152	173	0.85
Non-Cytoplasmic	174	180	0.58
Transmembrane Helix	181	201	0.56
Cytoplasmic	202	222	0.55
Transmembrane Helix	223	242	0.61
Non-Cytoplasmic	243	245	0.51
Transmembrane Helix	246	268	0.84
Cytoplasmic	269	276	0.84
Transmembrane Helix	277	297	0.92
Non-Cytoplasmic	298	303	0.76
Transmembrane Helix	304	327	0.85
Cytoplasmic	328	346	0.95
Transmembrane Helix	347	366	0.89
Non-Cytoplasmic	367	373	0.73
Transmembrane Helix	374	395	0.91
Cytoplasmic	396	401	0.91
Transmembrane Helix	402	420	0.85
Non-Cytoplasmic	421	449	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLSKIINNI SKSGLRNTTN SKNGGLLYFQ NYYMKSSTTI TRLNSGNNNY SNNNNNNNNI  60
   61 ILNDKFLNKQ QNDKKIIYNN IFEEKNQFLK RIYSTSTTTT STTTTTNINE NNIKNENNNE 120
  121 NNNENSNNNN EQSIKSNQTK SKGFLRGPYM TLIKLPITVY VTLTAIAGYV AACPIGAFDW 180
  181 VVLSQVSIGT FLASCSANIH NQEIEVQHDR KMPRTKDRPL VIGTINRGKA WVGSIALLTL 240
  241 GFGTMAVTPS LFVPGTLAAC NVILYCWYTD LKRVTPLNTW IGAFVGAIPP LIGSVAATGE 300
  301 FEAIGMLLAT FMYIWQIPHF LALSQVLREQ YRGAGYKMLS VTHEKKTVDR VSLAHALFGI 360
  361 PLPFIFDYFF NFNVHPITLT CMALSSASLA LPFITKISPK RLYIISLISL PITLFLSCLL 420
  421 RQPFAYYTDD DDEDKDKDNQ NQIENQDKK