YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56500101
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQALRRRN KLLKKNKERM DILMGISKVK EIEKDEENEL KIEKRGNADD NDNTTEQADN  60
   61 QNSNDKKQEN EKLKNSNLNT MNEIDTSPVA ISNSDTSNDI ALNANQTNEE GDKTSQNSDT 120
  121 LKNKKNVPSN GKNNIKKDEN CLTQSNDKKE RSNLKDNSKE EKNKDIDKTK DNNSKLDSND 180
  181 TKENENITAI KVDGKKKIQF FILIICSMLI SLLKRKFYDN KKIVYIDKSF INQKMIFRFM 240
  241 NSKFFLIFFS FLYNLLFSLI DIRSYLKKKN MTIYEIVENI KNIRNKFKNE SEALFFLLNN 300
  301 GSTFSIFFVN IIKSYILFMF LTHLFDDIFH SYSVFTSTPI FQKVNVI

Type	Start	End	Confidence
Cytoplasmic	1	197	0.55
Transmembrane Helix	198	213	0.48
Non-Cytoplasmic	214	238	0.68
Transmembrane Helix	239	262	0.80
Cytoplasmic	263	293	0.70
Transmembrane Helix	294	317	0.70
Non-Cytoplasmic	318	347	0.58