YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68074611
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALLRFAFD GGVKVKSAAE VGKRAVEYFR GDDFVNFLSS KQDILKKKFP NLIGNRNLSE  60
   61 MKEIEEFADL FIQKGFIYKA QYNPFKGVYE MDENGVYKRP KWPKRLIMTS KQNFDKAGFY 120
  121 ILVYERNKKL QYFMLMTLIS IVLICCMFPV WPLKLKLALW HLSVVFIGLL SAIIVGRIIA 180
  181 FVYFWFFGVD YWIFPNLFDE ECSIVESFIP FHSWERRNDS WLLVFARVVT AVLVAIGIHQ 240
  241 LGKTHSISDI QNFAKQSFID IIEWGNKKLS DTPENTFMYK SIDSKATFED QEGIEDPEDQ 300
  301 IVYDENEENY DCLKKCGFPP FEELVRRCFL KCDCMEVCKR KTIYYYSKIT LANKMLF

Type	Start	End	Confidence
Cytoplasmic	1	131	0.74
Transmembrane Helix	132	153	0.92
Non-Cytoplasmic	154	161	0.56
Transmembrane Helix	162	187	0.85
Cytoplasmic	188	220	0.71
Transmembrane Helix	221	242	0.87
Non-Cytoplasmic	243	357	0.71