YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68069931
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVFTIFKK RNKTKKRAST SNGRENTNEK KSLFNLDRKN PRRAHNSEDG LNYNGKAPHN  60
   61 KQDKSGNSTN NNNENYIVVD FPSLPYKNTE ACISFYYIEY LRNQILYGNR NLKIDENTKI 120
  121 MAEALLDKIE TTIYELENSL DHLEDNYKTE IKTIIFKAIY DRYYKIYTTL IAFSDSIPQP 180
  181 NNLYEYILNN GVYIRSKRNN DFNCRENIHN VYSYLDNIEI GNNDLSYNLE NIYIESIDIS 240
  241 RPTIINKTLI NTDIEIEYLP LKFNCSYCCQ NLQYAKLFLN NAINMSLYEK ALGELIVVKA 300
  301 LIDIPSVSME FVEGFDVKEM KAGERQWIPI YLGIALSAFT YVDVEFPFWF YIKNFINIKE 360
  361 EEYKNPDELF ELPSPYFFEI CYMFVDQKVF SKSTPIETVG KKSFFRYMEK VAIFFLHIMK 420
  421 LLLNLYILIS LFGFVIFFIT LSGYVEDIKH CRREKIIRKL EEQNVHTNHI YIKNLQLSET 480
  481 YIINLSLYSF WKYDKNLNEN DNSIDFTSYL LEPFIKELKG EENDDDNILQ DL

Type	Start	End	Confidence
Cytoplasmic	1	326	0.64
Transmembrane Helix	327	344	0.61
Non-Cytoplasmic	345	421	0.87
Transmembrane Helix	422	445	0.89
Cytoplasmic	446	532	0.90