YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56494388
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINENRMRI IPMDDTKNYS GSEENDTINL ENNSNDLSSY QNFLIGGPNT ESYKYTDKNC  60
   61 HALSSNGSIK HMHLMKRKKG FIGKDPYCST HLILGSGRTN KKLKKKILWN RGVDQNTNAS 120
  121 ELSYIRDFEN NSFMHDNSQH LVLYDNNNRY MDYSRNVKES RSEKMRYFFV YSPDIIQRWL 180
  181 RVIFNIIITS LIVTLIYFIF ISIREDINKK VAIQVQNVKE ESNTCKKQYY AHKCGTVSLP 240
  241 LLNEKCEEWL KCMNTDHKLY QDISFLSAQI LGQIMNAFIV QFEWKSICVI AFIFLLIFIG 300
  301 SNYALSIGGA NKTNNTDYNL YNPIMNPSHG IPPYPPYFNF YPYMPSPLNY NNSYSPDFTL 360
  361 MNPSYLHNKY FQDNFNRNPY NYSSPYQQHN NGNNDSNNSV SRNKENSENY NQNQKDGNKD 420
  421 SKKVGFLKYL TRDFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	178	0.60
Transmembrane Helix	179	201	0.88
Cytoplasmic	202	283	0.55
Transmembrane Helix	284	307	0.78
Non-Cytoplasmic	308	435	0.51