YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66910334, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVHFNPGL DSKEVNGNSV KEEAEVQIDD GKEETKDPDT MYHQVRKKIT PFVMSFGFRV  60
   61 FGLVLIILDI IMVIVDLSLS EKSRDVGGAP ETVSLVISFF FLIDVLLRVY VEGFKVYFSS 120
  121 KLNIVDACIV VITLVVTMIY AFSDFSGASL IPRVVTFLRS LRILILVRIF RLASQKRELE 180
  181 KVTRRMVSEN KRRYQKDGFD LDLTYVTERV IAMSFPSSGK QALYRNPIRE VVRFLDTKHM 240
  241 DHYKVFNLCS EKGYDPKFFH YRVERVMIDD HNVPSLDDML RYTACVRDWM AADSRNVIAI 300
  301 HCKGGKGRTG TMVCTWLIDS DQFESAQESL DYFGERRTDK SMSSKFQGVE TPSQSRYVGY 360
  361 YEIMKNQYNR QLPPRKSLKI KSIRIHSIAG VGKGNGSDLK LKIIVKHELV FQCVCAKQHN 420
  421 CTVFPDTGSN AVVISLQDGP IVTGDVKVMF ESSAGLPKGY EDCPFYFWFN TSFVENYRLF 480
  481 LSREELDNPH KPKTWDIYKE DFGVTLSFTE P

Type	Start	End	Confidence
Cytoplasmic	1	55	0.97
Transmembrane Helix	56	75	0.94
Non-Cytoplasmic	76	91	0.76
Transmembrane Helix	92	111	0.91
Cytoplasmic	112	121	0.91
Transmembrane Helix	122	142	0.94
Non-Cytoplasmic	143	511	0.59