YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57235075, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNTKLTRRD FVQLAAGSTA ALSLGALKLP EFEKMFAEAL KEIPVIWLQG AGCNGCTIST  60
   61 INVVSPTIQD LLLTSVVPGT HVSMQYHPTI MAAQGDLAMS TITDTVAKGP FVLVLEGSVP 120
  121 LKDNGIYAEV GEENGEGITI LEHVLNLAPK ALAIVAAGTC AAFGGITAAA PNPTGAKALE 180
  181 EILKDHNITT PVVNLPGCPP HPDWVVGTLA TILMSGLDAL DLDKMGRPKA YYGKLLHDQC 240
  241 PRRGHYEKGL FATKLSEPYC LFLVGCKGPV TYADCSDRLW NNKTRWCVEA DSPCIGCAHP 300
  301 GFPDAVSPMF EAPPVINSTD KLAIGIAGTA VVLTAGVAAV ELAKKAKRNA AKKG

Type	Start	End	Confidence
Signal Peptide	1	25	0.87
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	322	0.96
Transmembrane Helix	323	343	0.71
Cytoplasmic	344	354	0.74