YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57235070, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGKINRRDF VKGAGIASAA TVATIMATAS TVSAEELVNP SIKAMDEMGS ASLTRDLPES  60
   61 FYKRIENKDG YIGTTRVIAP TQRLDAREHG FSQIVRRGST GDWSGEPGDW GPVLFAAVQE 120
  121 KKKHAAEITP LEAADYTWSN AFQIAMDRWH ITLEPGRYQQ APIAATKVEL SPEEMTARIK 180
  181 KICRWFGCEQ VGICEVTEDM KPFFYSVGRT KGTYTTGHAN YVDEGREIPW PYPYKYCIVM 240
  241 ADKCDTDTLS AMTGPLVEAS AKIACSQSDF APHYLESIIR SLGHDAKANI FSDTDIMDTP 300
  301 FAVKAGLGEL GRSGLVISPW GAQMRIMEVF TNLPLVPDKP IDFGLQEFCK VCKKCADNCP 360
  361 ASAISMDDEP SEVDTVVKSI RWFQDGKKCL SQRLAYGCSK CQSVCPWSKP DTLIHEIGRM 420
  421 VGQNPAFAPF LVKLDDFFYN RYPEGHATGE WAPWR

Type	Start	End	Confidence
Signal Peptide	1	34	0.81
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	455	0.99