YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225467, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPRYFTDKL AKYGVLITAL VSILVLLAIA VFIIQGGLPL FSAVNPFDFL FGQSWSPTYD  60
   61 EYGILSMIVG SLLVTLGSMV IAVPLGIACA ILLAEVAPQR VRNLLRPAVE LLVGIPSVVY 120
  121 GLVGIMVIVP AIRNLGGTGY SVLAAVLVLS IMVLPTIISI SEDSLRAVPR TYRDGSLALG 180
  181 ASQWQTIWHM LLPAARSGVG ASIVLGMGRA IGETMAMIMV IGNAVIIPTS PLDPARTLTG 240
  241 NIAVEINYAA GLHENALFAT GLVLLILILI LNSLATLALK RGEQHA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.95
Transmembrane Helix	13	37	0.87
Non-Cytoplasmic	38	63	0.91
Transmembrane Helix	64	94	0.83
Cytoplasmic	95	110	0.84
Transmembrane Helix	111	132	0.92
Non-Cytoplasmic	133	138	0.83
Transmembrane Helix	139	160	0.92
Cytoplasmic	161	197	0.86
Transmembrane Helix	198	227	0.61
Non-Cytoplasmic	228	255	0.88
Transmembrane Helix	256	279	0.89
Cytoplasmic	280	286	0.93