YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225446, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLKAPKSI LVTLRQKLCC GCGICQAVCP AGAIKMQIDP QKGIYLPKLN EALCQNCGKC  60
   61 LKACPGTGIN LDEYTESLFG GKSPFLIKNS CYTAFSSDSL QRHLSTSGGI ATTLLAYALE 120
  121 TGLIDGALVS IAPPFSPLTP TGFIARTAEE LKQAAGSKYC PVAANTAISE IAARPGRYAV 180
  181 AGLPCHIQAI RKAERQNPVL QERIVLHLGI VCSSTMSFKG TEYILKKQGI NKDSVTSLSY 240
  241 RTNGWPGNMR LETCGGTTLR LPLKAYHPYH GHGFFTPRRC LICNDQLNEL ADISLGDAWL 300
  301 KELENDHEGT SAVIVRGSTG QGFYQSAVKN GCIKSQPLAA KRVMEWRNKR QDYAAKKAVL 360
  361 PLLGWKLPEY PAPHPPARRI AYLYTIEQVI NYHLGRTNSS LIIEPAKHFW TGLSGLAERL 420
  421 IGKRASRG

Type	Start	End	Confidence
Signal Peptide	1	33	0.89
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	428	0.99