YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225428, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGVLALIVL VILSWGNWDI MAVSVIYALA VISLFSFSTI YHALKKQENE INVWRKLDHI  60
   61 AIFIMIAGTY TPMAYIYLDG GWRLGMLIAT WAFVLIGVFQ KVFFLNAPRW LSPVTYLGMG 120
  121 WMAVFPLREF WLNMPSLVFW LIACGGLAYS IGAVIYGIKK PNPVPGVFGF HEIFHALILL 180
  181 GWAFHLAAVI LAILG

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.92
Transmembrane Helix	20	41	0.93
Cytoplasmic	42	56	0.85
Transmembrane Helix	57	78	0.87
Non-Cytoplasmic	79	83	0.80
Transmembrane Helix	84	104	0.89
Cytoplasmic	105	111	0.75
Transmembrane Helix	112	131	0.73
Non-Cytoplasmic	132	136	0.67
Transmembrane Helix	137	158	0.92
Cytoplasmic	159	172	0.64
Transmembrane Helix	173	194	0.90
Non-Cytoplasmic	195	195	0.77