YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234845, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.91
Transmembrane Helix	6	22	0.88
Non-Cytoplasmic	23	26	0.66
Transmembrane Helix	27	48	0.80
Cytoplasmic	49	55	0.69
Transmembrane Helix	56	74	0.78
Non-Cytoplasmic	75	78	0.70
Transmembrane Helix	79	98	0.92
Cytoplasmic	99	107	0.90
Transmembrane Helix	108	128	0.96
Non-Cytoplasmic	129	136	0.90
Transmembrane Helix	137	157	0.94
Cytoplasmic	158	172	0.88
Transmembrane Helix	173	192	0.91
Non-Cytoplasmic	193	200	0.61
Transmembrane Helix	201	220	0.85
Cytoplasmic	221	246	0.78
Transmembrane Helix	247	264	0.76
Non-Cytoplasmic	265	267	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKRVLSGC LLAIIALAVI WIDQPIAWLT LAMAVVVALA LNEFYNAVTV YLKSQPFKAL  60
   61 GIFWGMLIVI SPHLQIESVL PFLLGSFSLT SLIYLLTLKD RTDAFPRWAW TLSGVIYIGL 120
  121 LSSFWVALRE LPMGREWVLW TLILTAATDT MAFFIGSRFG KQKMAPSISP NKSWQGAIGG 180
  181 AVFSIIVAPI FADLLGLPIN VFVAMLIGLL VSVAGQTGDI AESLFKRNMH CKDSGNLIPG 240
  241 HGGIMDRLDS LLFTGIVVYY YVIWFIQ