YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225243, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDKLKQSE KMNLIPGAEP SSRMDPWWWL VAGVFVLTGG LMLFQPDPFL DIFKYVWVGI  60
   61 GITVLVAVVS YFLMLILGMF GALGRLSKNT ILRGLATFYV EIVRGIPLLV QLIWWYFAFP 120
  121 VIIQSIGQGL NFGPMMNYQA NPIVMAIWGM TFCYGAYMSE IYRAGIQSIP KGQMEAARSL 180
  181 GMSHTQAMRY VILPQALRVV LPPMGNEFIA LLKDTSLVST VAVADMVRLG REFTATNFNP 240
  241 IEVWTMIGLL YLILTLLSSR LINYIEKKTA FSR

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	45	0.96
Non-Cytoplasmic	46	56	0.82
Transmembrane Helix	57	83	0.85
Cytoplasmic	84	99	0.80
Transmembrane Helix	100	119	0.81
Non-Cytoplasmic	120	139	0.76
Transmembrane Helix	140	158	0.89
Cytoplasmic	159	186	0.78
Transmembrane Helix	187	202	0.53
Non-Cytoplasmic	203	242	0.66
Transmembrane Helix	243	264	0.85
Cytoplasmic	265	273	0.86