YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234790, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTQVKNNT SNIESITYGK LTWINIENPQ EPDTEYLAAN YPFHPLDLDD VLSRRQRPKI  60
   61 DEYKEYLFFV LHFPFYNKEL RTTVPAQLSV FIGENYIITL HSGNLKPLVK LYREMELDED 120
  121 ARPEYFSHGS GFLMYRIVDR LVDYCLPITV KLLDNLEEVE DTIFTGSGSD LNIVKDIALL 180
  181 RRDIIANRRI IWPMRAVIGC LENKLRKFIN QDMSVYFGDM TDHMDKVWDT LDETKEVIEG 240
  241 LSSTFDSMSS HRTNRAMRIL TIVATILLPF TMVASIFGMN IPLPFQNSEN AIYFVAVITA 300
  301 IIVGFMLYMF RRIRLI

Type	Start	End	Confidence
Cytoplasmic	1	258	0.99
Transmembrane Helix	259	279	0.94
Non-Cytoplasmic	280	290	0.81
Transmembrane Helix	291	310	0.97
Cytoplasmic	311	316	0.90