YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225235, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	38	0.82
Non-Cytoplasmic	39	44	0.71
Transmembrane Helix	45	65	0.77
Cytoplasmic	66	102	0.92
Transmembrane Helix	103	122	0.93
Non-Cytoplasmic	123	126	0.79
Transmembrane Helix	127	145	0.91
Cytoplasmic	146	153	0.78
Transmembrane Helix	154	175	0.89
Non-Cytoplasmic	176	183	0.81
Transmembrane Helix	184	205	0.91
Cytoplasmic	206	225	0.94
Transmembrane Helix	226	247	0.87
Non-Cytoplasmic	248	253	0.68
Transmembrane Helix	254	273	0.91
Cytoplasmic	274	283	0.86
Transmembrane Helix	284	305	0.88
Non-Cytoplasmic	306	306	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALTSERPD FQDWIQAARL KFLPQGVMPV VIAGALAFSE DTFDVVNFVV AFSAAAAVQI  60
   61 GLTMFNDTLD YVYGTDCKHA DAKNPFSGGS GVFTCGVIKP RQSLLVIFSL YFFALLCAIY 120
  121 MALDMGWGVM WIAVIGAAIS ILYSAKPMRL AYHGLGELMM LIGYGPVLTA WGYFVHTGMV 180
  181 NRDVLLIGVI PGLCMWAMIL INEIPDYQED RAAGKRNLTY RLGPKNAKNL FSISLAGLYT 240
  241 YILALVFTGV MPPLSAISLG GIPLAVMAVR IAHRYYNDPI KVAMANKLMV IIYSVTTATV 300
  301 AIGMLT