YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225226, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKKTVVLG ITGSISAYKA ADIASKLVAA GYTVKAVMTE NACRFISPLT IRTLSRQQVV  60
   61 TGMWDMNSEY SVEHVSLAEE AAVILVAPAT ANIIAELACG LAGDMISSTI LASKAPVIIA 120
  121 PAMNDNMYSN PATQQNIAKL KERGFVFVEP ESGRLASGKT GQGRLASVDT ILGSVTQVLG 180
  181 KNGPLAGKKL VISAGGTREP VDPVRYLGNR SSGKMGYALA EEAVRRGASV RLVSGAVDKP 240
  241 APFGVDIKYT ETAMEMFISL REAVKGADAL IMTAAVADYR PEKPAADKIK KGDGELDLHL 300
  301 VANPDILASL QGDFVKVGFA AESRDLMINA VKKMADKNLD IIAANDISQP DSTFGSDTTR 360
  361 LTLFFKNGRI EEMPLMSKQE AAVRLLDELS ALL

Type	Start	End	Confidence
Signal Peptide	1	17	0.61
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	393	0.99