YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234691, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGIVGYTGK RQAQAVLYDC LCRLEYRGYD SCGIAVNTPE VQVFKDAGKV RNILQNAPRF  60
   61 EGTAGLGHTR WATCGEPTRI NAHPHIDCTG KISLVHNGVI NNYAQLRKRL EANGHKVVSD 120
  121 TDTELIAHLI EEYDKGNLEE AVRQAVKEID GSYALVVMRS GDNTLVAVRK DSPLVIGVGD 180
  181 SEYLVASDVP AILGYTNRVI YPEEGDIAVI SPDSLKINRN GEYIIPRVEK INWTPDEAQK 240
  241 GGYSHYMLKE IHEQPQVIQN TLINMPLTES FYKSPLLEQG RKTGILFLAC GSSYHAALTG 300
  301 RYLVEEHLNI PVRLEVASEF NYMQHLPPCK LAVVLSQSGE TADILRAMRR LKQAGCMIVA 360
  361 ITNVAGSTAA RLADHVIYTQ AGPEIGVAAT KSFIAQLVVL YALCFACASA ASPRYQDYLS 420
  421 TMRLLPGAVQ KILGSHQNIK DAAIEVAKAK SAFFIGRGIN YPIALEGALK LKEISYIHAE 480
  481 GYAAGELKHG PFALLSPETP VLALVSRDQT YEAMLTGLRE IKVRRAPLIV IGEDGDDQLE 540
  541 QLADRVIKIP PFNRLFSPIL FSVVLQLLAF YAAYELGRDI DTPRNLAKSV TVE

Type	Start	End	Confidence
Cytoplasmic	1	353	0.60
Transmembrane Helix	354	373	0.73
Non-Cytoplasmic	374	392	0.85
Transmembrane Helix	393	413	0.75
Cytoplasmic	414	554	0.81
Transmembrane Helix	555	574	0.76
Non-Cytoplasmic	575	593	0.80