YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234635, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRQSKKYSQ KAGMLPGSVV FIGEGKTEPA SLSLSSYTPD AYQPLPLKTL ADCSTQVKQS  60
   61 GGIVWVKVSG LQDTAMVEEL GKCFNLHPLT LEDVVNTEQR PKLEDYGNYL FAVIKALHWD 120
  121 SELKKTRSEH ISLILGKNFL ISFQEHQSDI FNPIHQRLQS DNGRIRKLGA DYLLYSILDI 180
  181 IVDGYFSLIE GFGDYLDEIE EQLLSSPSSQ TLKQISEAKK EMLFIRKSIW PARETVAAIE 240
  241 RSETPLIDKS SHIYFRDIYD HLIQQIDTGE TYRDMLSNMI DIYLSSLSNR MSEVMKVLTI 300
  301 FASIFIPLTF IVGIYGMNFD IPELRFSWGY PGILLFMLAI ALILVLFFKR KKWL

Type	Start	End	Confidence
Cytoplasmic	1	296	0.98
Transmembrane Helix	297	317	0.94
Non-Cytoplasmic	318	326	0.85
Transmembrane Helix	327	348	0.94
Cytoplasmic	349	354	0.93