YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKKILGMP KAVFWPVMIV ILAMLVVGFL SGPIGVALFG DLGFPDWMKI TTPKPELPSA  60
   61 EIFSIGPVAI TNTILTAWVT ILVLVGLSIA ATRKMKLIPG RLQGALEMVL SWIYNMCVDA 120
  121 AGEKFGRKFF PLVATIFLFI IVNAWMNLLP GYNTIFIELG NGHEAHLLRG ANTDINLPLA 180
  181 LAAITFVMVE YWGIKTLGGF HYLSKFFNFK PLINAFRHKE GVIGIFNGFI TIFVGLLEFF 240
  241 LEFVRIISLT FRLFGNMIGG EILILMITFL APFIIGIPFY GLEMLVGFVQ ALVFCNLALV 300
  301 FSLIAVTPHG EENH

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	38	0.89
Non-Cytoplasmic	39	67	0.94
Transmembrane Helix	68	91	0.87
Cytoplasmic	92	128	0.74
Transmembrane Helix	129	149	0.89
Non-Cytoplasmic	150	174	0.63
Transmembrane Helix	175	199	0.73
Cytoplasmic	200	220	0.54
Transmembrane Helix	221	241	0.90
Non-Cytoplasmic	242	256	0.49
Transmembrane Helix	257	280	0.84
Cytoplasmic	281	285	0.48
Transmembrane Helix	286	307	0.91
Non-Cytoplasmic	308	314	0.52