YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57225036, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFLAAFRF LTNIPVPWLK EDWQGEKSHL DFARSLGFYP LVGLIVGLIL AVLGWVFSLF  60
   61 LPDVLTAALL TVSLVVITGG LHLDGLTDTF DGIAAGHKSF ERAQEVMHLP GVGAIGVLAA 120
  121 ICLLLSKFAA IVSLPSGSFI TGLILFPVIS RWAMVYAVVC YPYVRSQGLG KELKGGSAKA 180
  181 SLWLATIFCL AVCVILGGWA GLLAMFGSWL LIMYLASFFR RRLGGLNGDT YGSINEFTEV 240
  241 AALIFIVALS GYFS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.94
Non-Cytoplasmic	58	64	0.76
Transmembrane Helix	65	86	0.93
Cytoplasmic	87	105	0.94
Transmembrane Helix	106	131	0.88
Non-Cytoplasmic	132	138	0.83
Transmembrane Helix	139	161	0.87
Cytoplasmic	162	180	0.85
Transmembrane Helix	181	213	0.81
Non-Cytoplasmic	214	232	0.62
Transmembrane Helix	233	253	0.80
Cytoplasmic	254	254	0.63