YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224981, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEALGYGFI QNAIWAGLLA AIGCGIIGSY VVVKKLVSIS GGIAHASFGG IGLGYLLGIS  60
   61 PVLGALVFSL LAAAGMGAIT RRGRISEDTV IGMLWSLGMA LGVIFIGLTP GYAPDLFSYL 120
  121 FGNILTVPSS DLLLMLVLDA LIIGVVWLFY KEFLGISFDE EFCRVSGMPT GLLYIIMLGL 180
  181 IALTVVMLIR VVGIILVIAL LTIPAAVARR FTDNLFKMML LSIGFGMVFC LGGLWLSYVL 240
  241 DLASGATIIL FSAAVFLLVW AFKNKKKQEP VRD

Type	Start	End	Confidence
Cytoplasmic	1	11	0.64
Transmembrane Helix	12	33	0.91
Non-Cytoplasmic	34	50	0.64
Transmembrane Helix	51	79	0.80
Cytoplasmic	80	90	0.84
Transmembrane Helix	91	113	0.91
Non-Cytoplasmic	114	131	0.85
Transmembrane Helix	132	150	0.96
Cytoplasmic	151	161	0.90
Transmembrane Helix	162	183	0.88
Non-Cytoplasmic	184	187	0.65
Transmembrane Helix	188	208	0.90
Cytoplasmic	209	217	0.75
Transmembrane Helix	218	236	0.96
Non-Cytoplasmic	237	242	0.73
Transmembrane Helix	243	262	0.95
Cytoplasmic	263	273	0.95