YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234518, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	28	0.94
Cytoplasmic	29	37	0.89
Transmembrane Helix	38	60	0.91
Non-Cytoplasmic	61	89	0.89
Transmembrane Helix	90	109	0.89
Cytoplasmic	110	116	0.81
Transmembrane Helix	117	140	0.89
Non-Cytoplasmic	141	146	0.82
Transmembrane Helix	147	169	0.93
Cytoplasmic	170	180	0.91
Transmembrane Helix	181	204	0.91
Non-Cytoplasmic	205	211	0.83
Transmembrane Helix	212	235	0.90
Cytoplasmic	236	244	0.85
Transmembrane Helix	245	265	0.89
Non-Cytoplasmic	266	270	0.66
Transmembrane Helix	271	291	0.85
Cytoplasmic	292	299	0.77
Transmembrane Helix	300	317	0.88
Non-Cytoplasmic	318	325	0.74
Transmembrane Helix	326	346	0.95
Cytoplasmic	347	361	0.82
Transmembrane Helix	362	385	0.87
Non-Cytoplasmic	386	391	0.74
Transmembrane Helix	392	411	0.93
Cytoplasmic	412	427	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGMETEIYF KFILSFGLIL LVARLGGAFA ERFLKQPAVI GELLAGIIIS PFLLGHFLFA  60
   61 NDPVILNFAL IDGVFSQNGE HLSEFAPMEI ISQIAVVVLL FVAGLETNVA SFIKNSFTGA 120
  121 MVAIGGVVVP FALGVFGAMY FFPDLHIAGW LFIGAILTAT SIGITVRILM DMGKLSSREG 180
  181 TIILVAAVVD DIIGLVILSV VISMAQSGSI NALSAIGTGV IGFAVWLGIL LLGVYGHKYI 240
  241 SKYILTPFKA SGTMPVMALI VGLLVSYMVT LVGLHPVVGA YVAGLMFAST AEKEEILHQT 300
  301 RPIMLFIAPF FFAYLGMQVD LKEVWAVIVP ALVIVVLAII GKIIGCYFPA RFVGKTSHKG 360
  361 ALIVGVGMVP RGEVGLIVAG AGLIAGAITR DLFGIAVAVS ILTTLVMPLM IKPLFKPKAE 420
  421 ANGKELP