YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224893, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.94
Transmembrane Helix	5	23	0.93
Cytoplasmic	24	55	0.94
Transmembrane Helix	56	77	0.93
Non-Cytoplasmic	78	95	0.89
Transmembrane Helix	96	118	0.93
Cytoplasmic	119	138	0.95
Transmembrane Helix	139	164	0.86
Non-Cytoplasmic	165	174	0.82
Transmembrane Helix	175	196	0.91
Cytoplasmic	197	248	0.96
Transmembrane Helix	249	268	0.87
Non-Cytoplasmic	269	275	0.58
Transmembrane Helix	276	296	0.90
Cytoplasmic	297	305	0.90
Transmembrane Helix	306	325	0.92
Non-Cytoplasmic	326	332	0.71
Transmembrane Helix	333	355	0.92
Cytoplasmic	356	376	0.88
Transmembrane Helix	377	402	0.80
Non-Cytoplasmic	403	411	0.69
Transmembrane Helix	412	435	0.86
Cytoplasmic	436	479	0.88
Transmembrane Helix	480	498	0.87
Non-Cytoplasmic	499	519	0.76
Transmembrane Helix	520	539	0.95
Cytoplasmic	540	586	0.82
Transmembrane Helix	587	607	0.87
Non-Cytoplasmic	608	612	0.69
Transmembrane Helix	613	635	0.90
Cytoplasmic	636	708	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSWLVWTA GLIAVLFALY LIRDVMRRDS GTPAMQDIAG RILEGAVAFL RRQYRTIAIL  60
   61 AIVAAVAVGA VVGLLGGERG LEAYGITGFG IAWRTALAFM AGALCSGISG IIGMYISVKS 120
  121 NLRCAAAAAK GGLSEAVTVA IRGGAVSGFL IVALSLLGVA GIYYMYGGNP EVTPHLIIGF 180
  181 GFGASFVALF AQLGGGIYTK AADMGADLVG KVEAGIPEDD PRNAAVIADL VGDNVGDCAG 240
  241 RGADLFESTA AENIGAMILG ITLYLATGNA AWVLFPLVVR AFGIIASIVG IMFVRGKDNE 300
  301 SPMNALNRGY FTAVGLSIIG LFVANQTIGG DLWLFGAGVI GILTSVAMVF ITQYYTEFRY 360
  361 NPVKEIANAS RTGPATNIVS GTAVGLETAM PTAITIGAAL LLSYWMGGQT GIAGGAVFGT 420
  421 AAATMGMLMT CPFILAMDTF GPITDNANGV IEMAGVGGKV RKITDHLDAV GNTTKALTKG 480
  481 YALASAGLAA FLLFEAYLER VAFLRGETEM MAVDLSRIEV FVGGLLAVAL VFFFSAVAIK 540
  541 AVGKTASKII EEVRRQFKAD PGILAGTSRP DYARAVDITA AAGLREMIFP GLLPVLSPIV 600
  601 LGIFLKVTGY DSAMAIAGFL MVGTISGIMM AAYLNNSGGA WDNAKKYIET GEMLESDGSP 660
  661 VMKHTVTHAA TVVGDTVGDP FKDTAGPSIH VLIKLLSTIT LVLAPLFI