YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.92
Transmembrane Helix	5	25	0.95
Cytoplasmic	26	52	0.88
Transmembrane Helix	53	71	0.94
Non-Cytoplasmic	72	80	0.68
Transmembrane Helix	81	100	0.96
Cytoplasmic	101	123	0.85
Transmembrane Helix	124	146	0.92
Non-Cytoplasmic	147	155	0.78
Transmembrane Helix	156	176	0.89
Cytoplasmic	177	228	0.97
Transmembrane Helix	229	251	0.87
Non-Cytoplasmic	252	259	0.86
Transmembrane Helix	260	282	0.94
Cytoplasmic	283	299	0.83
Transmembrane Helix	300	319	0.92
Non-Cytoplasmic	320	324	0.77
Transmembrane Helix	325	346	0.88
Cytoplasmic	347	363	0.64
Transmembrane Helix	364	395	0.76
Non-Cytoplasmic	396	396	0.30
Transmembrane Helix	397	414	0.64
Cytoplasmic	415	462	0.78
Transmembrane Helix	463	484	0.83
Non-Cytoplasmic	485	497	0.70
Transmembrane Helix	498	522	0.81
Cytoplasmic	523	564	0.82
Transmembrane Helix	565	584	0.76
Non-Cytoplasmic	585	588	0.54
Transmembrane Helix	589	610	0.86
Cytoplasmic	611	655	0.77
Transmembrane Helix	656	678	0.87
Non-Cytoplasmic	679	679	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIWIALVVG LAGLVVAGLL ARFVLRQDEG ISKVREIASA IREGAMAFIT REYTVMAIFV  60
   61 AAVTIILALL PSLGWPVSVS FLFGALCSGL AGFIGMSIAV RANARTTTAA SHSLNQGLKF 120
  121 SFRAGSVMGM SVVGIGIIGL SIMYFAFGSN ADFLQILPGY GFGASSVAIF ARVGGGIFTK 180
  181 AADTGADIVG KVEKGIPEDD PRNAAVVADF VGDNVGDVAG MGADLFESYV DSIIATMALA 240
  241 TVGAFSMKLG YSLVPSEEAA FFLPMLVAAG GILASVIGIF LVRTGEKLQM KALLAALRKG 300
  301 TLAAAFLSAV FSFLAVWYLQ ADLGLFVAIL AGLAAGVFIG ESTNYFTSYV YKPTLGIAAS 360
  361 CQTGAATNII SGFSVGLLSV VPPIILVVAA IVIAYTFGDV YGVALAGVGM LATLGIQDAT 420
  421 DAYGPVADNA GGIAEMAGLP KEVRERTDAL DSLGNTTAAI GKGFAIGSAG LTSLALLLSY 480
  481 TQAVGITASQ VSLLDVKVLA GLLLGVMMPA VFCSLTLKAV GVTSFSIVNE VRRQFKEIAG 540
  541 IMDGTAKPEY GKCVDICTRD SIKQMILPGI ITVVSPVIVG WLLGSVAVVG FLAGIILCGF 600
  601 VLAVTFANAG GAWDNAKKWV ETGAYGGKGS DAHKAAVVGD TVGDPMKDTA GPSLNIMIKL 660
  661 VAIIALVMAP ILANFSGII