YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEWLLVALA LVLPPVLGSL LRGLDRILTA RMQGRFGPPL LQPVYDTIKL LAKRRMITGR  60
   61 MQAVGSIGYL LFIMAATVMF FLGQDLLLIV LVLGVADVFL VVGAFATRSP YSQIGANREL 120
  121 LQILSYEPIL IITAIGLYVA NGSFMISEID QPLLPSLWPI LLALVLVLVI LMRKSPFDIS 180
  181 SSEHAHQELV KGVFIEYSGI HLGLIEIAHM YELILVLGFI SLMWLPGIVP GVALALGCWF 240
  241 LVLLIDNITA RLTWSSMLKI SWMFGLGLAL VNLIGLSALG GV

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.83
Transmembrane Helix	5	24	0.84
Cytoplasmic	25	60	0.92
Transmembrane Helix	61	81	0.91
Non-Cytoplasmic	82	86	0.79
Transmembrane Helix	87	107	0.94
Cytoplasmic	108	122	0.86
Transmembrane Helix	123	146	0.83
Non-Cytoplasmic	147	153	0.83
Transmembrane Helix	154	172	0.94
Cytoplasmic	173	192	0.87
Transmembrane Helix	193	213	0.82
Non-Cytoplasmic	214	221	0.63
Transmembrane Helix	222	245	0.85
Cytoplasmic	246	259	0.78
Transmembrane Helix	260	280	0.93
Non-Cytoplasmic	281	282	0.84