YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234339, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.41
Transmembrane Helix	26	47	0.87
Cytoplasmic	48	54	0.54
Transmembrane Helix	55	76	0.86
Non-Cytoplasmic	77	94	0.66
Transmembrane Helix	95	124	0.77
Cytoplasmic	125	134	0.66
Transmembrane Helix	135	154	0.91
Non-Cytoplasmic	155	173	0.87
Transmembrane Helix	174	196	0.94
Cytoplasmic	197	217	0.87
Transmembrane Helix	218	237	0.85
Non-Cytoplasmic	238	241	0.62
Transmembrane Helix	242	260	0.90
Cytoplasmic	261	271	0.77
Transmembrane Helix	272	295	0.82
Non-Cytoplasmic	296	312	0.75
Transmembrane Helix	313	331	0.69
Cytoplasmic	332	337	0.51
Transmembrane Helix	338	358	0.67
Non-Cytoplasmic	359	365	0.60
Transmembrane Helix	366	385	0.91
Cytoplasmic	386	396	0.89
Transmembrane Helix	397	419	0.86
Non-Cytoplasmic	420	424	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWLALSIFV TTILLVVFKP RPFNEAGAIC FGVFLMLVLG LIPLSSIGQT LATNLNILFF  60
   61 FLGLMLVSYF AELSGFFDSA ANLALKLSNG SSWRLLGLVF ALGIVITMFM SNDATALLLT 120
  121 PVIFMLVQRY GLKPLPYVFA CAFVANAASF IFPFSNPVNL LAVDKFGLSL SEYLGFMLIP 180
  181 ALLAITIMIV IFYFIFRRDL KAGFSLVTAK AVVANNFSRS VRLALVFLAI GCLLTSFMGW 240
  241 PLAIPLMLTA FILMGITLFY KKMDFGHLRQ SVSWSILPFV LGLAFMVNGL ENAGITSALG 300
  301 NWLSGTMAGD NQLETGLITS FGTAIGSNLI NNWPMMMVSV SSLSAITDIS GGNAWLVYQA 360
  361 ILGADLGPNL LIMGSLSTML WLMLLRKRGL IIKPLDYTRL GLIITPPSLL VSTFAIFQLG 420
  421 KLSN