YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224747, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGMANLRKE IALKVTNPII NLLAKTGLTP NMVTVTGFIV TLVAAGIIVN GNLLLAGIVM  60
   61 LLAGVFDMLD GALARRTGKV TRFGAVLDST LDRVSEAAIL IGVCAFYSQS GQTPAVVLAV 120
  121 VTLTLSLLVS YIRARAEAMG LEGKEGFFTR PERVVALAIG MMFNILVPVL VLVSVLSLIT 180
  181 VIQRLANVYR QTK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	48	0.71
Non-Cytoplasmic	49	52	0.50
Transmembrane Helix	53	73	0.78
Cytoplasmic	74	89	0.69
Transmembrane Helix	90	108	0.62
Non-Cytoplasmic	109	114	0.64
Transmembrane Helix	115	134	0.92
Cytoplasmic	135	153	0.84
Transmembrane Helix	154	179	0.88
Non-Cytoplasmic	180	193	0.80