YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234269, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	40	0.92
Non-Cytoplasmic	41	46	0.70
Transmembrane Helix	47	67	0.92
Cytoplasmic	68	72	0.79
Transmembrane Helix	73	93	0.88
Non-Cytoplasmic	94	100	0.68
Transmembrane Helix	101	119	0.93
Cytoplasmic	120	126	0.72
Transmembrane Helix	127	148	0.85
Non-Cytoplasmic	149	172	0.86
Transmembrane Helix	173	193	0.90
Cytoplasmic	194	223	0.94
Transmembrane Helix	224	246	0.93
Non-Cytoplasmic	247	258	0.89
Transmembrane Helix	259	283	0.89
Cytoplasmic	284	303	0.74
Transmembrane Helix	304	327	0.88
Non-Cytoplasmic	328	350	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPCGTRNF SYKTDMAIFR TKTHWAMLIG FLILLFSLPF NISSYWLGIM NLIGITVVAA  60
   61 AGLNILMGYC GQLSVGHAGF IAVGAYTTAI LASKLGVPFP FDMIASGIMA GLVGVLFGLP 120
  121 SLRVKGFYLA ISTIAAQFII IWVINHWSSL TGGFNGIVIP PINLFNFDFT TQGSQYFIIM 180
  181 LVAVLAIFFM KNIARTRIGR AFVAIRDNDL AAEVMGINVF KYKLLAFFIG CFLAGVAGSL 240
  241 MAHWIGYLTA ENFTLSDSIL YVGIVIIGGL GTGVGPIFGA LFIRLLQQGV QYVSPLMGSA 300
  301 FPQLPSGFAA GLGPMVFGLA IVLFLVLEPR GLAHRWQLFK SSYRYWPFSY