YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234260, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLLQYVIT GITVGLVYSL IALGFTLIWK SSSVANLALG QMVLICSWFT YSMLAQVGMP  60
   61 FWLGFICVVL FALALGWLME RIILRPLIGQ PILSLVTVTL GVGFFLEGVV SFIWPQSVAA 120
  121 LPKIFPETPI HIGSAVISQE YVWAAGISLL LFAMLTLFFK YHKMGVAMRA TADDQQAVQA 180
  181 CGIPVTRIFS LSWMLAIVLA AVGGVLMSSI GGITLGLVET GIKAFSVVIL GGLDSFLGAM 240
  241 IAGPIIGLAE NLGGGYLTSL TWPGVKEVIP FIIIIIVMFI KPYGLFGQER IERI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.70
Transmembrane Helix	7	29	0.91
Cytoplasmic	30	33	0.69
Transmembrane Helix	34	54	0.75
Non-Cytoplasmic	55	60	0.63
Transmembrane Helix	61	79	0.96
Cytoplasmic	80	91	0.69
Transmembrane Helix	92	114	0.85
Non-Cytoplasmic	115	140	0.84
Transmembrane Helix	141	161	0.92
Cytoplasmic	162	192	0.73
Transmembrane Helix	193	217	0.85
Non-Cytoplasmic	218	224	0.59
Transmembrane Helix	225	249	0.76
Cytoplasmic	250	263	0.44
Transmembrane Helix	264	285	0.82
Non-Cytoplasmic	286	294	0.56