YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_DEHM1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEINVDPVA FSIGSLVVKW YGIMMALGVI ALVSWIFWRI KRGADISYDT VLTAAIIAIP  60
   61 SGIIFSKLLH VIDAWEYYSL NPGAILSGEG LTIFGAIIGA TIGLWIYSRY SHFNLGYLLD 120
  121 VAVPGILLGQ AIGRVGCLLN GCCYGEYGGS GCSVIYTNPA SAAPYGVEVV PTQAYEIIFL 180
  181 LCLFAFSLFI AKKLRPDGQL FLLYISLYAA WRVAIGFVRV NDDFALGLEQ AQVVGLILIA 240
  241 LAVPFFIYRQ RKQKEADKNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.95
Transmembrane Helix	17	38	0.92
Cytoplasmic	39	47	0.84
Transmembrane Helix	48	69	0.90
Non-Cytoplasmic	70	84	0.83
Transmembrane Helix	85	107	0.90
Cytoplasmic	108	114	0.80
Transmembrane Helix	115	135	0.81
Non-Cytoplasmic	136	171	0.87
Transmembrane Helix	172	191	0.93
Cytoplasmic	192	199	0.89
Transmembrane Helix	200	220	0.91
Non-Cytoplasmic	221	227	0.86
Transmembrane Helix	228	248	0.93
Cytoplasmic	249	260	0.96