YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224662, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLADRLSEI VAARPEAVAL KSENKQVTYN ELDSISDCYA WALTRRGVVA GERVALLMPN  60
   61 CFEFVFFYFG IVKIGAVAVP LDPKYKWPEL KALLDDCQPV ALVCQTEGLN VLHPHRSELG 120
  121 YIQHYISLED TVYPGVAVLK DFLANISELP FEIDVPETQV AHIAYTSAAQ LRPQGVMISH 180
  181 ENLVKTAAIS ACGFEQTAED RVILFALPLH HVIGLVVVML GTLFCGGSVI LLSGVSIDCL 240
  241 LKTIERESIT VFLGVPFIHA MLVRHLRENS SEYNLTSLRL CGSAGAPLPP ELVLAYRILL 300
  301 DRDLVDFYGL TESTSHVTCQ PLDRSGKPGS VGKTLNGFEL EVVDGAGHLL LPFQAGEVII 360
  361 RGPVMQGIYR QPERTSQMLR NGWLYTGDIG YKDNEGFVYI KSFIKPMLIT KGQNIYFSDL 420
  421 EDLLLSCPGV KEVLAVGIPD PDGMRGEVVR VAVVLRDGFE QTPAGIKKYC LDNLAQYKTP 480
  481 REIFILKELP CDLLGLPCRE TLRQMQK

Type	Start	End	Confidence
Cytoplasmic	1	55	0.56
Transmembrane Helix	56	71	0.29
Non-Cytoplasmic	72	210	0.66
Transmembrane Helix	211	235	0.85
Cytoplasmic	236	247	0.53
Transmembrane Helix	248	263	0.63
Non-Cytoplasmic	264	507	0.81