YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_DEHM1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVCIIGTT TWGITLGTVI AHKGREVMLW ARTEDEAALL SAQRRPADFL PEDYYFPEYL  60
   61 NVTASLEEAL SGADMVLMAV PSQRMRPNIR LAAPLLTKNM LVCSASKGLE IGTAKRMSQV 120
  121 IADEISPDFS QNICVLSGPN LAMEILKGLP AVTVLAADTE KTAKKAAKLV TASNFCAYTN 180
  181 TDIIGVELGG SLKNIIALGA GIADGLSFGN NAKSALITRG LTEISALGAA LGANPLTFSG 240
  241 LAGLGDLIAT CSSNLSRNHF VGVELTKGRS LNDIMYSMSN VAEGVSTTAV AYELARSMDL 300
  301 EMPVTENIYN VLYNNADPKE AARKLMAAQA AHELAGRKWD LFKMFRRRRT RKTPELNPD

Type	Start	End	Confidence
Signal Peptide	1	21	0.73
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	359	0.96