YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57233679, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNLVLYGL INTALALLVS PLFISLIKKV KAYAQGRVGP PLLQTYYQLY KLFKKERVYS  60
   61 YQTSFIIRLT PYLSLVFMLV ASLSVPLVFI PAADPGLGNI ILFLYLMVMS RFFMALSGLD 120
  121 AGSSFGGMGS SREMTISAII EPVVIIVFGA LAYVLQTTSL FDMFAQVRES SFLSNPSLIL 180
  181 TGISLFIILI VETSRIPVDN PETHLELTMI HEAMTLEYSG PDLALIELSH ALKQTLLMGV 240
  241 LLNIIAPWGL AAESTAGGIA LAFLAFVIKG SLLAVGVGIF ESLMAKFRLF RVPGLFMLAF 300
  301 FFSFITVIFK FLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.89
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	68	0.94
Transmembrane Helix	69	90	0.88
Non-Cytoplasmic	91	99	0.67
Transmembrane Helix	100	119	0.87
Cytoplasmic	120	134	0.79
Transmembrane Helix	135	155	0.91
Non-Cytoplasmic	156	171	0.84
Transmembrane Helix	172	191	0.90
Cytoplasmic	192	231	0.91
Transmembrane Helix	232	252	0.86
Non-Cytoplasmic	253	258	0.78
Transmembrane Helix	259	280	0.94
Cytoplasmic	281	288	0.84
Transmembrane Helix	289	309	0.93
Non-Cytoplasmic	310	313	0.65