YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57233628, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.95
Transmembrane Helix	7	30	0.90
Non-Cytoplasmic	31	36	0.88
Transmembrane Helix	37	57	0.95
Cytoplasmic	58	69	0.90
Transmembrane Helix	70	94	0.82
Non-Cytoplasmic	95	134	0.88
Transmembrane Helix	135	156	0.89
Cytoplasmic	157	181	0.85
Transmembrane Helix	182	202	0.95
Non-Cytoplasmic	203	235	0.76
Transmembrane Helix	236	256	0.94
Cytoplasmic	257	269	0.81
Transmembrane Helix	270	290	0.90
Non-Cytoplasmic	291	329	0.80
Transmembrane Helix	330	352	0.89
Cytoplasmic	353	394	0.77
Transmembrane Helix	395	415	0.88
Non-Cytoplasmic	416	452	0.45
Transmembrane Helix	453	478	0.84
Cytoplasmic	479	481	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINNVLHYL GLVIAILGGF MFIPFVFSLI NAEPDQLAFG VSIVITLSAG FLLWRFTPIT  60
   61 ERRISLRESL AIVAGSWIMA ALFGSLPFII SGVLPSVIDC IFEAMSGLTT TGASVFSSVE 120
  121 NLPHGILVWR SLTQWIGGLG IIMLFVTILP MLGIGASQLM EAETPGQQER LTSRIRDTAR 180
  181 TLWLLYLGFT VAGFIALMLA GLPGFDAFNI ILTTTPTGGF APVSSIGVYN NLAVELILIF 240
  241 FMVASGVNFG LYYYLLWKGR PAKFFGNAEF KLYIGILIGC ILLINWDLVA NAGMGIFEGL 300
  301 RQASFQTASV MTTTGFATAD FAQWPHFSQA ILLVLMVVGA SAGSTGGGLK VIRLLVLFKY 360
  361 TYRRIQLTFN PNAVIPIKIG GYVISDKLIS RSVGLTILYF ATLWAGFLVM SAIGLDFVTA 420
  421 LSSITSCLGN VGPALGTVGP MASYADIPGI GKLVLLTAML VGRIELFTLL VLFIPAFWRW 480
  481 R