YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224022, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.84
Transmembrane Helix	7	26	0.90
Cytoplasmic	27	32	0.81
Transmembrane Helix	33	52	0.88
Non-Cytoplasmic	53	57	0.77
Transmembrane Helix	58	79	0.89
Cytoplasmic	80	87	0.86
Transmembrane Helix	88	108	0.94
Non-Cytoplasmic	109	116	0.77
Transmembrane Helix	117	138	0.92
Cytoplasmic	139	149	0.92
Transmembrane Helix	150	172	0.90
Non-Cytoplasmic	173	184	0.77
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	218	0.81
Transmembrane Helix	219	238	0.87
Non-Cytoplasmic	239	239	0.32
Transmembrane Helix	240	259	0.64
Cytoplasmic	260	266	0.35
Transmembrane Helix	267	290	0.80
Non-Cytoplasmic	291	295	0.36
Transmembrane Helix	296	320	0.87
Cytoplasmic	321	326	0.39
Transmembrane Helix	327	353	0.75
Non-Cytoplasmic	354	356	0.44
Transmembrane Helix	357	383	0.81
Cytoplasmic	384	567	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELGSSFGL DLIIVLVSAV LAGLLARRFR LPLLLGYLGA GIAIGPNGFG LVQSPGVIES  60
   61 MATVGVILLL FTLGLDFSLD ELKRVGKVAV LGGLIQIVVT AGFGFLLGRG LGWDINASIF 120
  121 FGFMVSLSST LIVLKILMDK GEAEAPHGRV MLGILLVQDI CLIPLMIILP ALGGEGGDIG 180
  181 LTIGVAFAKA AAFILAMFGL GFWVFPRLLG RVASHSHELF LLSVITLSLG AALGATALGL 240
  241 SPAVGAFIAG LLIGQSMYAK QALADIIPLR DIFGALFFVS LGMLANLNFA VENIGLVLLV 300
  301 VVFLLVIKSL VAGAVPWLFG YTFQTSFTTG IGLMQIGEFS FVLAGVGLAS SVISDSIYAI 360
  361 TISSAVITMI ITPFALSFSG AAYRKVSQWP LASKLVSLRT SGQAEFMDLD ISNHAVICSQ 420
  421 GGVAKTLTRV MNRRNFPFLV IDLDPQTIAE LRRQKAPAIY GDAANPEILR FARLDKARLL 480
  481 ICAMPGFADT EQVVKNARKI NDRLDIVARV SSDIQAEKLK KMGVSEVVQP EFEVGLELSR 540
  541 HAMHRFGMTT IEIQYILNSL RNMGKPE