YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	30	0.88
Non-Cytoplasmic	31	39	0.81
Transmembrane Helix	40	58	0.91
Cytoplasmic	59	71	0.83
Transmembrane Helix	72	92	0.90
Non-Cytoplasmic	93	106	0.73
Transmembrane Helix	107	128	0.85
Cytoplasmic	129	135	0.82
Transmembrane Helix	136	158	0.91
Non-Cytoplasmic	159	167	0.73
Transmembrane Helix	168	187	0.93
Cytoplasmic	188	200	0.85
Transmembrane Helix	201	219	0.93
Non-Cytoplasmic	220	233	0.80
Transmembrane Helix	234	255	0.95
Cytoplasmic	256	267	0.80
Transmembrane Helix	268	291	0.73
Non-Cytoplasmic	292	304	0.76
Transmembrane Helix	305	327	0.84
Cytoplasmic	328	340	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLERVRKE WFMVGIVVAI GAAKLEPSVG VNGGPLKPEI TVSYIAVATI FFNSGLSLKT  60
   61 EELTSALVHL KLHLFIQVFT LAFFPTTIWL FLQLLSVTSI NEWLLKGLQT VGCMPPPVSS 120
  121 AVILTKAVGG NEAAAIFNSA FGSFLGIVVT PVLLLLFLGS SSSVPFTSIF SQLFMTVVVP 180
  181 LVIGQIVRRY IKDWLERKKP PFGVVSSSVL LMIIYTTFCD TFSNPNIDLD KFSLILILFI 240
  241 IVSIQLSFML LTFVFSTRNN SGFTPADTVA IIFCSTHKSL TLGIPMLKIV FAGHEHLSLI 300
  301 SLPLLIYHPA QILLGSVLVP TIKSWMVSRQ KGVKLTRPTV