YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90652807, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVVAVLGG GIGGLSACHH LSKSPNVSKI VLLEGSGRCG GWLSSVRRDD GAVFEQGPRG  60
   61 VRPGGAVGRN TLNMVSELGL ESELLPITSD HLASQNRFLY VKGQLHKMPS GLGGVLRTIP 120
  121 PFSRPIIQSV LKELVISKGT EEDESVHAFV SRRLGSELAD IAIDCLCRGV FAGDSRQLSV 180
  181 RSCFPPLYEA EQARGSIVLG MLMGSGAGPK VVPSGLAKRA SKESWTQWSL KRGMQTLPEA 240
  241 LEDSLRRRNG VELHHHAKVK RLNVDSTGWE IKLDDGTSLK ADHVISTLPA SALASVLPPA 300
  301 AQTLSEQLRS IASVNVALVN LEYEGFILPV TGFGHLVPST EDAGVLGVVY DSVPFPEHNR 360
  361 SRGATTRLTV MMGGAWFEQT FGSPDLVMEQ TLLDRAVQAV NSHLSVTSQP VWSCVALLKN 420
  421 CIPQYHLGHW KRLEKMRQYI SNHNLALTLA GASYDGVSVN DVIFSGRTAA EGLVGKI

Type	Start	End	Confidence
Signal Peptide	1	17	0.87
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	477	0.99