YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|80971508, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHQEPYSVQ ATAAIAAVIT FLILFTIFGN SLVILAVLTS RSLRAPQNLF LVSLAAADIL  60
   61 VATLIIPFSL ANELLGYWYF RRTWCEVYLA LDVLFCTSSI VHLCAISLDR YWAVSRALEY 120
  121 NSKRTPRRIK CIILTVWLIA AVISLPPLIY KGDPGPQPRG RPQCKLNQEA WYILASSIGS 180
  181 FFAPCLIMIL VYLRIYLIAK RSHRRGPRAK GGPGKGESKQ PRPVPGEVSA SAKLPTLVSQ 240
  241 LATAGETNGC SQHTGEKDEG ETSEDTGTPA LPPSWPALPS SGQGQKEGVC GTSPEEEAEE 300
  301 EEEEECEPQT LPASPASACS PPLQQPQGSR VLATLRGQVL LGRGMGTSSG QWWRRRAQLT 360
  361 REKRFTFVLA VVIGVFVLCW FPFFFSYSLG AICPQHCKVP HGLFQFFFWI GYCNSSLNPV 420
  421 IYTIFNQDFR RAFRRILCRQ WTQTAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.92
Transmembrane Helix	13	38	0.88
Cytoplasmic	39	48	0.88
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	87	0.93
Transmembrane Helix	88	108	0.93
Cytoplasmic	109	128	0.88
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	174	0.91
Transmembrane Helix	175	198	0.88
Cytoplasmic	199	364	0.99
Transmembrane Helix	365	385	0.96
Non-Cytoplasmic	386	405	0.88
Transmembrane Helix	406	426	0.93
Cytoplasmic	427	446	0.97