YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68349861
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.71
Transmembrane Helix	25	50	0.83
Cytoplasmic	51	71	0.68
Transmembrane Helix	72	93	0.86
Non-Cytoplasmic	94	100	0.69
Transmembrane Helix	101	121	0.93
Cytoplasmic	122	129	0.82
Transmembrane Helix	130	152	0.88
Non-Cytoplasmic	153	183	0.92
Transmembrane Helix	184	206	0.89
Cytoplasmic	207	226	0.84
Transmembrane Helix	227	249	0.87
Non-Cytoplasmic	250	283	0.65
Transmembrane Helix	284	303	0.90
Cytoplasmic	304	313	0.57
Transmembrane Helix	314	336	0.86
Non-Cytoplasmic	337	1127	0.72
Transmembrane Helix	1128	1146	0.96
Cytoplasmic	1147	1265	0.98
Transmembrane Helix	1266	1286	0.94
Non-Cytoplasmic	1287	1300	0.89
Transmembrane Helix	1301	1323	0.85
Cytoplasmic	1324	1796	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSYKDDV DKNRANRYSS LYHDWFMIGV GCFTYFLVGL SLTLVYVLCE MDYFMLSGLF  60
   61 RIQRFFSDDA YYFSKQVTLI YGVIGFILTL LIGPIGKVSC ILWSWVLTLT YLVVGTYSYL 120
  121 FRFTQYGKLL IKSMSIISLI THILMCNFIF FLFDPMNKDK IKANESSDSN GKHSSVIGPY 180
  181 GSLVYYRVIL FLVGFFLGSP LVSCVLRMSL SATTFSEKDP IMSSVDLCRI MMLMFSITVM 240
  241 ASTFLTLTFS NGLSPVTDHI WFPFSMISYR TFKKTMFNFF DLELLLVVWI INPLIMTLIP 300
  301 YTTRIHFEFH KFSLVHRLLF AVMLIAIMIL MHRDIIYSCI RTIKLINASI FNILYTDGYT 360
  361 QICDEHLRKE PVSTTPYSNY TVRTNVSTEP MVVPHEISIQ SVVSYPYLEN GWDDVENEDK 420
  421 KLLWRSYHML QSLQRLTHLI NTGGDMDIRN IFSDPELSLC KPQIDNSDDI SENNADDSMK 480
  481 SIVFLLNEYR SELLSMLGNT INRYWFDKFV FSRSECCTTN LLFRIVLTLL IKFKKLDSSI 540
  541 SQFPSCTCYS SIISLFYIIL LLSVIATSKI LFKLTDHMTE EETQNIQSDQ SLRSTILLQN 600
  601 ISRLTKDLND LVWILLSNSS LLESRMVLLR LCEYEFKVSA ILEVLKPVDN CCCVCCYKCK 660
  661 NNKVEGENND NNKECNLKEK LTVLNPKGLS SYTDFLSENI VEGNHPCMCI VIKYRLIENV 720
  721 KISRCYLRNK SLNVLSTIGR KFEKHSYSAT QLLDVSKFIY FVIDTLLNLT FWMKRRYLCN 780
  781 CDKSKCCSSD GNNNCTCCNG DKVKCCLCPS SKSECKCSCK SGNTCNELCC RGQSHSGNNC 840
  841 VCCRCCCSCF CKKSHDEYYF YFITMIFYIS QLFEDVFTFD NEKIRMAIQF ISSLVFYYDP 900
  901 FNFSKNSFSS KRTFINYYRL VLNPKSDPIT KIESGTILKL INGQIVFFFR FSEITINLNS 960
  961 ELFKKVFQII SELIFFIIKG GFISTKVDGN IVGILIRLSN KYILILFNEE LKQTQQALNC1020
 1021 HTDNNKCNCS RCKIFWSSLY LFSIKYNSIA SLLQNLGIII SLNIGLGKVN IYYNEFLIRF1080
 1081 TKNSRISEST HGLLYERNGN FDHINPKYFG YDDVYRPSPQ FGSGYFKFVI TRVFTVIVLV1140
 1141 VLFIFIRTRF DRFVNTDIFG RYLIKVDSNI GRLREVLHNR LSHSVRNISR MGSLDDLLGD1200
 1201 MTEGDVGHNL VFHHPERYQD VIDNMGMADM GHYDAMSDID TLSDTFTDAS FDGSTKAVQE1260
 1261 SRRRKVGFYI LIIVFSLLSA LYLNFVVRDL SVMLQLDHTT WSYFISITVL MGMIISLVVK1320
 1321 YCVHLYDFVY VLENYSNKLT KIESFVDDSF GGVTGNLTYT SKFVLLFQLL RSMKTDLVSL1380
 1381 FSMNYPYQIP AHSLMKNKVY PYKDMTGGME RMMTCENIEC IRKMVLESIG TPESMDLQNV1440
 1441 LDFVSYVTVR NTAEFDQYRG YFSGFERYLA WRLGKLLGHN FFLLTYGRYS CMLEMDHRIR1500
 1501 KLRIPSTQFL NCQFLWQLFG NYESDLISLK CLGEDSIGIP LTHVQKDVLK NKFADEYLDE1560
 1561 FKKYQEFLIR KLHIKASKCY DSPSCYFPYP ELINTTLDRD KVSRLTREYF GDSSRRLSLS1620
 1621 LPTTNCDVTN KIVNGKGAES PGVSVTQFCD HWLDMRLSCC ETEDCEKGVR FAHDLIMSKL1680
 1681 NGDCNVFESI RDTVANLKLS ILNTEETYET PEDIHVPVKS SEHRSLKDYT DKLTEFRYQT1740
 1741 TDNYQDTVLD YLNRYMIETM TNREKIMVPL GIFLTWYGIP VCEQHLRNMG KFQYLI