YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148235799, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALAAGAGGA DAERDMKPQP EGKGEPGASP GKAAGDRGNQ RLKYLSLAVL VVQNASLILS  60
   61 IRYARTLPGE RFFSTTAVVM AEILKGITCL LLMLLQKTGN VKELTLFLYD AIVVQYMDTL 120
  121 KLAVPSLIYT LQNNLQYVAI SNLPAATFQV TYQLKILTTA LFSVLLLRKS LTRLQWGSLV 180
  181 ILFAGVAIVQ AEQSGGKESV ADSGQSYVVG LVAVAISCLS SGFAGVYFER ILKGSSASVW 240
  241 LRNVQLGIFG TALGLLAMWQ QDGAAVAERG FFHGYTPLVW CVIFNQAFGG LLVAVVVKYA 300
  301 DNILKGFATS LSIVVSTAAS VHLFGFHVDI PFAVGAGLVI GAVYLYSLPR KPDAASSSSS 360
  361 QNSSQANTFL PKSVLTK

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	64	0.73
Non-Cytoplasmic	65	71	0.69
Transmembrane Helix	72	95	0.73
Cytoplasmic	96	173	0.67
Transmembrane Helix	174	191	0.94
Non-Cytoplasmic	192	206	0.86
Transmembrane Helix	207	228	0.94
Cytoplasmic	229	238	0.92
Transmembrane Helix	239	259	0.93
Non-Cytoplasmic	260	275	0.85
Transmembrane Helix	276	297	0.92
Cytoplasmic	298	302	0.88
Transmembrane Helix	303	324	0.88
Non-Cytoplasmic	325	329	0.74
Transmembrane Helix	330	348	0.93
Cytoplasmic	349	377	0.96