YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPXM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	249	0.89
Transmembrane Helix	250	268	0.86
Non-Cytoplasmic	269	277	0.78
Transmembrane Helix	278	300	0.91
Cytoplasmic	301	310	0.79
Transmembrane Helix	311	332	0.89
Non-Cytoplasmic	333	337	0.79
Transmembrane Helix	338	356	0.93
Cytoplasmic	357	374	0.86
Transmembrane Helix	375	395	0.93
Non-Cytoplasmic	396	409	0.83
Transmembrane Helix	410	429	0.92
Cytoplasmic	430	512	0.94
Transmembrane Helix	513	538	0.66
Non-Cytoplasmic	539	544	0.70
Transmembrane Helix	545	567	0.89
Cytoplasmic	568	575	0.89
Transmembrane Helix	576	596	0.93
Non-Cytoplasmic	597	603	0.74
Transmembrane Helix	604	625	0.89
Cytoplasmic	626	669	0.56
Transmembrane Helix	670	696	0.76
Non-Cytoplasmic	697	697	0.37

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAFGKYLQR KQIEEWSGYY INYKLMKKKV KQYAEQIQGG SQHPRHVLKD FSRMLDTQIE  60
   61 TTVLFMLEQQ GLLSGRLAKL RESHDAILEQ PDISRIFELR EAYRDVGRDL LQLLKFVELN 120
  121 AIGLRKILKK FDKRFGYRFA DYYVKTRANH PYSQLQQVFK HVGVGAVVGA ISRNLHELQE 180
  181 NEGSFYSIYD QPVLPAQDPV VEAINNAVDK LTFSTNFLNF LAQHALIMQD DLVTPSEDTI 240
  241 DERSYHFNSL LLNLGNTFLY MVNTYIIVPT ADDYSMSLGA AATVCGVVIG SMAVAQVFSS 300
  301 VYFSAWSNKS YFKPLVFSSI ALFIGNLMYA LAYDANSIAL LLLGRVCCGL GSARAVNRRY 360
  361 ISDCVPLRIR MQASAGFVSA SALGMACGPA LAGLLQIKFK FYKFTFNQST LPGWVMAVAW 420
  421 LFYLVWLCIS FREPLRDTED GEKNNRNETT SDRVESSRVE EGLRLPLLIT SGIKPEDEEE 480
  481 CDESEESPED SHKPANSFIE AYRLLTPSVK VQLLIYFMLK YSMEILLSES SVITSYYFSW 540
  541 TTSSVAIFLA CLGLTVLPIN ILVGSYISNM FEDRQILLTS EIIVFLGILF SFNLFVPYTV 600
  601 PQYVISGLIM FVAAEVLEGV NLSLLSRVMS SRLSKGTYNG GLLSTEAGTL ARVVADATIT 660
  661 LGGYLGRGHL LNATLLPSLV ICIGSIVATC CTYNSLY