YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79320443
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFKIWRCSD SSCSLPGDYG FDPLGLSDPE GTGGFIEPRW LAYGEIINGR FAMLGAAGAI  60
   61 APEILGKAGL IPAETALPWF QTGVIPPAGT YTYWADNYTL FVLEMALMGF AEHRRLQDWY 120
  121 NPGSMGKQYF LGLEKGLAGS GNPAYPGGPF FNPLGFGKDE KSLKELKLKE VKNGRLAMLA 180
  181 ILGYFIQGLV TGVGPYQNLL DHLADPVNNN VLTSLKFH

Type	Start	End	Confidence
Cytoplasmic	1	48	0.83
Transmembrane Helix	49	71	0.56
Non-Cytoplasmic	72	91	0.62
Transmembrane Helix	92	111	0.51
Cytoplasmic	112	175	0.84
Transmembrane Helix	176	194	0.75
Non-Cytoplasmic	195	218	0.86