YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79325225
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDVLKFNFK FSQVVSVFVS NSSNMQKEIA GDAPSAPTTR VRHRKRNSDV GAGAGKPNGN  60
   61 HLLVNDSKKY KSFLIRAYST FWMIGGFALI VYLGHLYITA MVVVIQIFMA RELFNLLRKT 120
  121 HEDKQLPGFR LLNWHFFFTA MLFVYGRILS QRLVNTVTPD KVLYRLVTSL IKYHMAICYS 180
  181 LYISGFVWFI LTLKKKMYKY QFSQYAWTHM ILIVVFTQSS FTVANIFEGI FWFLLPASLI 240
  241 VINDIFAYIC GFFFGRTPLI KLSPKKTWEG FIGASITTVI SAFLLANIMG RFLWLTCPRE 300
  301 DLSTGWLLCD PGPLFKQETH ALPGWISDWL PWKEISILPV QWHALCLGLF ASIIAPFGGF 360
  361 FASGFKRAFK IKDFGDSIPG HGGITDRMDC QMVMAVFAYI YHQSFVVPEV LSVDKLLDQI 420
  421 ITSLTLEEQQ ALLVKLGQML QEKVIGS

Type	Start	End	Confidence
Cytoplasmic	1	72	0.64
Transmembrane Helix	73	92	0.70
Non-Cytoplasmic	93	95	0.44
Transmembrane Helix	96	115	0.81
Cytoplasmic	116	130	0.86
Transmembrane Helix	131	149	0.93
Non-Cytoplasmic	150	169	0.94
Transmembrane Helix	170	192	0.90
Cytoplasmic	193	204	0.89
Transmembrane Helix	205	224	0.92
Non-Cytoplasmic	225	232	0.65
Transmembrane Helix	233	255	0.89
Cytoplasmic	256	269	0.82
Transmembrane Helix	270	289	0.91
Non-Cytoplasmic	290	339	0.94
Transmembrane Helix	340	362	0.93
Cytoplasmic	363	447	0.95