YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78049055, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKSFKLSD LDFNNIGGWP QQARIVFCVV VGLFIMVLAW FLLISSKRDE LEGLESTESQ  60
   61 LRTEFETQQG RAVNLEPLKQ QLAQMEQVLQ QMLRQLPSKT EMPDLIIDIS QTALSSGLSN 120
  121 ELFQPGPESP KEFYAEKPIA LRMVGSYHQF GAFVSGVASL PRVVILTMHD INLKPKDPKA 180
  181 GIGPRGALEL SGTVKTYRYL DDEEMAEQEK AAANAAKKGG Q

Type	Start	End	Confidence
Cytoplasmic	1	20	0.53
Transmembrane Helix	21	44	0.89
Non-Cytoplasmic	45	221	0.55