YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78034541, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.67
Transmembrane Helix	19	40	0.91
Cytoplasmic	41	58	0.60
Transmembrane Helix	59	76	0.80
Non-Cytoplasmic	77	77	0.34
Transmembrane Helix	78	97	0.68
Cytoplasmic	98	105	0.59
Transmembrane Helix	106	123	0.69
Non-Cytoplasmic	124	130	0.67
Transmembrane Helix	131	152	0.89
Cytoplasmic	153	163	0.84
Transmembrane Helix	164	182	0.94
Non-Cytoplasmic	183	193	0.74
Transmembrane Helix	194	214	0.95
Cytoplasmic	215	232	0.93
Transmembrane Helix	233	253	0.93
Non-Cytoplasmic	254	260	0.76
Transmembrane Helix	261	282	0.93
Cytoplasmic	283	300	0.96
Transmembrane Helix	301	319	0.63
Non-Cytoplasmic	320	324	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLYVYSGQL QQSSMHQQTL WLFSGIALVL VIATLISETL RWRARERPSA VLDNLVARIR  60
   61 AWWVMAAVVG LAFVFGRAGV IGLFALVSLF ALREFITLTP TRRGDYYALL AAFYIVLPWQ 120
  121 YGLVWTGWYG MYTLLIPVYA FLVLPILATI GGDTTRYLER TAKVQWGLMI CVFCISHVPA 180
  181 LLNLDIPGYA GRNLLLIAFL VIVVQSSDVL QYVWGKLAGR HLIAPKLSPS KTVEGFIGGV 240
  241 LSASLLGMAL WWITPFAPWH AFGLALVANL MGFFGGLVMS AIKRDRGIKD WGHMIEGHGG 300
  301 VLDRLDSVCF AAPVFFHLIR YGWA