YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79313441
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFMFLLTSA LLGYIYSPKL DSPPPRWVHF AHGLLLFLYQ TFDAVDGKQA RRTNSSSPLG  60
   61 ELFDHGCDAL GCALETMAYG STAMCGRDTF WFWVISAVPF FGATWEHYFT NTLTLPVVNG 120
  121 PTEGLALIYC GHFFTAIVGA EWWAQPFGKS IPLFSWVPFL NEMQMSRIIL FSMIFFAVIP 180
  181 TLAINTSNVY KVVHSRNGSM LLALAMLYPL VTLIAGVLIW DYLSPIDLIR NYPHLVVLGT 240
  241 GLAFGFLVGR MILAHLCDEP KGLKTNMCMS LLYLPFALAN ALTARLNDGV PLVDEFWVLL 300
  301 GYCIFTLSLY AHFATSVIHE ITTALGIYCF RITRKEA

Type	Start	End	Confidence
Cytoplasmic	1	88	0.66
Transmembrane Helix	89	109	0.81
Non-Cytoplasmic	110	164	0.45
Transmembrane Helix	165	186	0.89
Cytoplasmic	187	199	0.56
Transmembrane Helix	200	223	0.87
Non-Cytoplasmic	224	231	0.65
Transmembrane Helix	232	254	0.90
Cytoplasmic	255	264	0.60
Transmembrane Helix	265	284	0.79
Non-Cytoplasmic	285	297	0.67
Transmembrane Helix	298	330	0.64
Cytoplasmic	331	337	0.78