YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	66	0.96
Non-Cytoplasmic	67	74	0.76
Transmembrane Helix	75	95	0.90
Cytoplasmic	96	114	0.91
Transmembrane Helix	115	138	0.89
Non-Cytoplasmic	139	163	0.95
Transmembrane Helix	164	185	0.90
Cytoplasmic	186	224	0.76
Transmembrane Helix	225	245	0.77
Non-Cytoplasmic	246	272	0.60
Transmembrane Helix	273	300	0.80
Cytoplasmic	301	322	0.66
Transmembrane Helix	323	348	0.68
Non-Cytoplasmic	349	389	0.56
Transmembrane Helix	390	412	0.89
Cytoplasmic	413	417	0.49
Transmembrane Helix	418	440	0.87
Non-Cytoplasmic	441	466	0.54
Transmembrane Helix	467	488	0.73
Cytoplasmic	489	504	0.60
Transmembrane Helix	505	527	0.90
Non-Cytoplasmic	528	559	0.58
Transmembrane Helix	560	582	0.72
Cytoplasmic	583	598	0.47
Transmembrane Helix	599	624	0.83
Non-Cytoplasmic	625	637	0.51
Transmembrane Helix	638	662	0.79
Cytoplasmic	663	673	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIEQRRIMK REGEEEEDNN QLSLQEEEPD TEEEMSGRTI EPWTKQITVR GVFVSIVIGV  60
   61 VFSVIAQKLN LTTGIVPNLN SSAALLAFVF VQTWTKILKK SGFVAKPFTR QENTMIQTSA 120
  121 VACYGIAVGG GFASYLLGLN HKTYVLSGVN LEGNSPKSVK EPGLGWMTAY LFVVCFIGLF 180
  181 VLIPLRKVMI VDLKLTYPSG LATAVLINGF HTQGDAQAKK QVRGFMKYFS FSFLWGFFQW 240
  241 FFSGIEDCGF AQFPTFGLKA WKQTFFFDFS MTFVGAGMIC SHLVNLSLLL GAILSYGLMW 300
  301 PLLDKLKGSW FPDNLDEHNM KSIYGYKVFL SVALILGDGL YTFVKILFVT IANVNARLKN 360
  361 KPNDLDDVGH KKQRKDLKED ENFLRDKIPM WFAVSGYLTF AAVSTVVVPL IFPQLKWYYV 420
  421 IVAYIFAPSL AFCNAYGAGL TDINMAYNYG KIGLFVIAAV TGRENGVVAG LAGCGLIKSV 480
  481 VSVSCILMQD FKTAHYTMTS PKAMFASQMI GTVVGCIVTP LSFFLFYKAF DIGNPNGEFK 540
  541 APYALIYRNM AILGVQGFSA LPLHCLQMCY GFFGFAVLVN VVRDLTPAKI GRFMPLPTAM 600
  601 AVPFLVGAYF AIDMCVGTLI VFVWEKMNRK KAEFMVPAVA SGLICGEGLW TLPAAVLALA 660
  661 GVKPPICMKF LAS