YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88933772, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRKTRAAS FSIASNSTLI AMKTVVGFVT GSVSILAEAI HSTLDLIAAV IAFFGVKASD  60
   61 KPADIDHPYG HGKWENVSGT VEAVLIFVAA IWIIYEAVNR LIGGSAPEML EWGVVIMGIS 120
  121 VVANTLVSRY LKKIAHETDS VALEADASHL TTDVITSAGV LVGLVLVKIT GWVILDPIVA 180
  181 LLVALLIIKA AWDILNKSFG ALVDARLPKE EVEAITSLIN EHTSKLVEFH NLRTRKAGSY 240
  241 RYVDLHLVMP KTLSVEKSHA ICDHLEQDLK DKLKVDYVTI HVEPCTEENC PECQMSCKKR 300
  301 HSELPDTVNM P

Type	Start	End	Confidence
Cytoplasmic	1	10	0.86
Transmembrane Helix	11	31	0.77
Non-Cytoplasmic	32	36	0.49
Transmembrane Helix	37	56	0.72
Cytoplasmic	57	76	0.64
Transmembrane Helix	77	95	0.92
Non-Cytoplasmic	96	108	0.66
Transmembrane Helix	109	131	0.83
Cytoplasmic	132	148	0.71
Transmembrane Helix	149	167	0.69
Non-Cytoplasmic	168	172	0.49
Transmembrane Helix	173	192	0.84
Cytoplasmic	193	311	0.86