YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77361303, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.39
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLRRFTIF QRFALLVGIV VLGLVILSIS SLSNQYQALK NEQYLKTQNL VETAYSVIDH  60
   61 FYNLEQSNTL TQQQAQSQAL ATISALRYDN TNYFWINDYH PKMIMHPFKP DLNGTDLTNN 120
  121 KDPDGTALFV EMVKVTQQAG SGFVPYKWPK PGKDKPVDKI AFVKGFNQWQ WVIGSGVYLD 180
  181 SIDGAFAEQR NLIIINAVVM IIALIILSYF IGKSIITPTR LAADMMKDIS QGEGDLTRSL 240
  241 DETGNDEISE LAHSFNLFIL KMRESLTHVS QSAHDVNQHA HTVDEASKTS QSFIELQNDS 300
  301 STQVAAAMEQ MTHQIHDVSR NAEAAEQAAN DAASNASSGK NVVANTITAI ETLSSNIETV 360
  361 SRVTADLASE SNNIGSVLEV IRSISEQTNL LALNAAIEAA RAGEHGRGFA VVADEVRTLA 420
  421 SRTGKSTDEI QTMITKLQNG AKAAVEAVKS SQALSASTVE QASSANTSLN EIERLVSVIT 480
  481 EMNSQIARAT EQQTLAADEV NLRINDLANS TKESLDNTKQ LTGASEQLKQ SSSQLSSVVT 540
  541 RFKLD

Type	Start	End	Confidence
Signal Peptide	1	33	0.53
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	191	0.90
Transmembrane Helix	192	212	0.70
Cytoplasmic	213	545	0.62